% cat /etc/redhat-release Scientific Linux SL release 5.3 (Boron)
ATTENTION: The STAR software stack will NOT compile and/or link properly with the default SL5.3 gcc version (it has problems interpreting FORtran codes hence linking will fail in a few places and running may crash unexpectedly). You MUST upgrade and make 4.3.2 or greater the minimal version number.
% gcc --version gcc (GCC) 4.3.2 20081007 (Red Hat 4.3.2-7)
To make gcc 4.3.2 the default, you could use the following quick helper script (you do not want to execute this twice)
#!/bin/sh
##### comp_switch.sh #################################
#
# Make GCC 4.3 the default system compiler
# Written by Chris Hollowell @ RACF
#
# gcc
mv /usr/bin/gcc /usr/bin/gcc41
mv /usr/bin/gcov /usr/bin/gcov41
mv /usr/bin/x86_64-redhat-linux-gcc /usr/bin/x86_64-redhat-linux-gcc41
ln -sfn /usr/bin/gcc43 /usr/bin/gcc
ln -sfn /usr/bin/gcov43 /usr/bin/gcov
ln -sfn /usr/bin/x86_64-redhat-linux6E-gcc43 /usr/bin/x86_64-redhat-linux-gcc
# g++
mv /usr/bin/c++ /usr/bin/c++41
mv /usr/bin/g++ /usr/bin/g++41
mv /usr/bin/x86_64-redhat-linux-c++ /usr/bin/x86_64-redhat-linux-c++41
mv /usr/bin/x86_64-redhat-linux-g++ /usr/bin/x86_64-redhat-linux-g++41
ln -sfn /usr/bin/g++43 /usr/bin/c++
ln -sfn /usr/bin/g++43 /usr/bin/g++
ln -sfn /usr/bin/x86_64-redhat-linux6E-g++43 /usr/bin/x86_64-redhat-linux-c++
ln -sfn /usr/bin/x86_64-redhat-linux6E-g++43 /usr/bin/x86_64-redhat-linux-g++
# gfortran
mv /usr/bin/gfortran /usr/bin/gfortran41
ln -sfn /usr/bin/gfortran43 /usr/bin/gfortran
See Setting up your computing environment for more information related to the sysname.
A reminder that some of those RPMs may have been created at BNL. See Additional software components "System Wide RPMs" for more information.
kernel-headers-2.6.18-164.6.1.el5 compat-libf2c-34-3.4.6-4 sl-release-notes-5.3-1 chkconfig-1.3.30.1-2 atk-1.12.2-1.fc6 libtermcap-2.0.8-46.1 readline-5.1-1.1 gawk-3.1.5-14.el5 elfutils-libelf-0.137-3.el5 binutils-2.17.50.0.6-9.el5 libart_lgpl-2.3.17-4 slang-2.0.6-4.el5 libgpg-error-1.4-2 lcms-1.18-0.1.beta1.el5_3.2 libgfortran-4.1.2-44.el5 gzip-1.3.5-10.el5 libusb-0.1.12-5.1 dmidecode-2.7-1.28.2.el5 perl-Digest-SHA1-2.11-1.2.1 iputils-20020927-45.el5 libFS-1.0.0-3.1 numactl-0.9.8-7.el5 acl-2.2.39-3.el5 mgetty-1.1.33-9.fc6 rcs-5.7-30.1 compat-glibc-2.3.4-2.26 dos2unix-3.1-27.2.el5 libattr-2.4.32-1.1 sqlite-3.3.6-2 keyutils-libs-1.2-1.el5 libmng-1.0.9-5.1 gmp-4.1.4-10.el5 libgfortran43-4.3.2-7.el5 beecrypt-4.1.2-10.1.1 compat-readline43-4.3-3 libXrender-0.9.1-3.1 libjpeg-devel-6b-37 redhat-menus-6.7.8-3.el5 libXres-1.0.1-3.1 libIDL-devel-0.8.7-1.fc6 sqlite-devel-3.3.6-2 compat-gcc-34-3.4.6-4 perl-libwww-perl-5.805-1.1.1 anacron-2.3-45.el5 readline-devel-5.1-1.1 freetype-devel-2.2.1-21.el5_3 gmp-devel-4.1.4-10.el5 audiofile-devel-0.2.6-5 gamin-devel-0.1.7-8.el5 perl-DateManip-5.44-1.2.1 keyutils-libs-devel-1.2-1.el5 db4-devel-4.3.29-9.fc6 libX11-1.0.3-9.el5 libXfixes-4.0.1-2.1 libXTrap-1.0.0-3.1 libXfontcache-1.0.2-3.1 compat-gcc-34-c++-3.4.6-4 fontconfig-2.4.1-7.el5 openldap-2.3.43-3.el5 alsa-lib-1.0.17-1.el5 libselinux-devel-1.33.4-5.1.el5 mesa-libGLU-6.5.1-7.7.el5 libgssapi-0.10-2 mx-2.0.6-2.2.2 python-sqlite-1.1.7-1.2.1 libselinux-utils-1.33.4-5.1.el5 python-iniparse-0.2.3-4.el5 mtools-3.9.10-2.fc6 glibc-utils-2.5-34 wget-1.10.2-7.el5 xorg-x11-apps-7.1-4.0.1.el5 libtool-1.5.22-6.1 ntp-4.2.2p1-9.el5_3.2 libXft-2.1.10-1.1 gail-1.9.2-1.fc6 pam-0.99.6.2-4.el5 redhat-artwork-5.0.9-1.SL.2 screen-4.0.3-1.el5 xorg-x11-proto-devel-7.1-9.fc6 e2fsprogs-libs-1.39-20.el5 openssl-devel-0.9.8e-7.el5 portmap-4.0-65.2.2.1 libXcursor-devel-1.1.7-1.1 pycairo-devel-1.2.0-1.1 emacs-common-21.4-20.el5 openssh-server-4.3p2-29.el5 quota-3.13-1.2.5.el5 pygtk2-devel-2.10.1-12.el5 tk-devel-8.4.13-5.el5_1.1 mesa-libGLU-devel-6.5.1-7.7.el5 libXi-devel-1.0.1-3.1 libXcursor-devel-1.1.7-1.1 libXfont-devel-1.2.2-1.0.3.el5_1 dbus-glib-0.73-8.el5 mesa-libGLU-6.5.1-7.7.el5 sendmail-8.13.8-2.el5 bind-utils-9.3.4-10.P1.el5 pam_krb5-2.2.14-10 systemtap-runtime-0.7.2-3.el5_3 Xaw3d-devel-1.5E-10.1 openldap-devel-2.3.43-3.el5 dbus-libs-1.1.2-12.el5 dbus-python-0.70-7.el5 avahi-qt3-0.6.16-1.el5_2.1 rpm-build-4.4.2.3-9.el5 redhat-lsb-3.1-12.3.EL pm-utils-0.99.3-10.el5 gimp-print-4.2.7-22.2.el5 xorg-x11-fonts-truetype-7.1-2.1.el5 hal-0.5.8.1-38.el5 ImageMagick-6.2.8.0-4.el5_1.1 openafs-kernel-1.4.10-2.6.18_164.6.1.el5_1.1 xemacs-21.4.22-1 tcsh-6.16.00-1 filesystem-2.4.0-2 desktop-backgrounds-basic-2.0-37 pygobject2-doc-2.12.1-5.el5 emacs-leim-21.4-20.el5 libstdc++-4.1.2-44.el5 libjpeg-6b-37 libxml2-2.6.26-2.1.2.7 libxml2-2.6.26-2.1.2.7 sqlite-3.3.6-2 tcl-8.4.13-3.fc6 tcp_wrappers-7.6-40.6.el5 gmp-4.1.4-10.el5 procps-3.2.7-11.1.el5 glib2-devel-2.12.3-4.el5_3.1 make-3.81-3.el5 lapack-3.0-37.el5 indent-2.2.9-14.fc6 bc-1.06-21 hesiod-3.1.0-8 crash-4.0-7.2.3.el5_3.1 ethtool-6-2.el5 libvolume_id-095-14.20.el5_3 bison-2.3-2.1 ftp-0.17-35.el5 dev86-0.16.17-2.2 ctags-5.6-1.1 hdparm-6.6-2 compat-readline43-4.3-3 elfutils-libelf-0.137-3.el5 nspr-4.7.3-2.el5 blas-3.0-37.el5 libidn-0.6.5-1.1 libXfont-1.2.2-1.0.3.el5_1 audit-libs-1.7.7-6.el5 valgrind-3.2.1-6.el5 libtermcap-2.0.8-46.1 libXext-1.0.1-2.1 libXrandr-1.1.1-3.1 libXau-devel-1.0.1-3.1 libXcomposite-0.3-5.1 libfontenc-devel-1.0.2-2.2.el5 libattr-devel-2.4.32-1.1 glibc-headers-2.5-34 libxkbfile-1.0.3-3.1 gcc43-c++-4.3.2-7.el5 perl-libxml-perl-0.08-1.2.1 libXp-devel-1.0.0-8.1.el5 xorg-x11-xtrans-devel-1.0.1-1.1.fc6 blas-devel-3.0-37.el5 libtool-ltdl-devel-1.5.22-6.1 ncurses-devel-5.5-24.20060715 bzip2-devel-1.0.3-4.el5_2 libcap-devel-1.10-26 binutils-devel-2.17.50.0.6-9.el5 libXi-1.0.1-3.1 libXinerama-1.0.1-2.1 libXcomposite-0.3-5.1 gcc-4.1.2-44.el5 shadow-utils-4.0.17-14.el5 krb5-libs-1.6.1-31.el5_3.3 mysql-5.0.45-7.el5 libxml2-devel-2.6.26-2.1.2.7 ghostscript-fonts-5.50-13.1.1 pygobject2-2.12.1-5.el5 nfs-utils-lib-1.0.8-7.2.z2 python-numeric-23.7-2.2.2 postgresql-libs-8.1.11-1.el5_1.1 e2fsprogs-devel-1.39-20.el5 elfutils-libelf-devel-static-0.137-3.el5 xterm-215-8.el5 compat-openldap-2.3.43_2.2.29-3.el5 tcpdump-3.9.4-14.el5 ksh-20080202-2.el5 automake17-1.7.9-7 kernel-devel-2.6.18-164.6.1.el5 GConf2-2.14.0-9.el5 pygtk2-2.10.1-12.el5 gtk2-engines-2.8.0-3.el5 gd-2.0.33-9.4.el5_1.1 vim-X11-7.0.109-4.el5_2.4z pam-0.99.6.2-4.el5 openldap-2.3.43-3.el5 mesa-libGL-devel-6.5.1-7.7.el5 which-2.16-7 libXext-devel-1.0.1-2.1 kbd-1.12-21.el5 yp-tools-2.9-0.1 authconfig-5.3.21-5.el5 mc-4.6.1a-35.el5 libXv-devel-1.0.1-4.1 libSM-devel-1.0.1-3.1 mysql-devel-5.0.45-7.el5 libXTrap-devel-1.0.0-3.1 libXfixes-devel-4.0.1-2.1 libXtst-devel-1.0.1-3.1 gail-1.9.2-1.fc6 apr-util-1.2.7-7.el5_3.1 libuser-0.54.7-2.el5.5 libXmu-devel-1.0.2-5 gail-devel-1.9.2-1.fc6 mesa-libGLU-devel-6.5.1-7.7.el5 gd-devel-2.0.33-9.4.el5_1.1 policycoreutils-1.33.12-14.2.el5 cups-1.3.7-8.el5_3.6 kdbg-2.0.2-1.2.1 selinux-policy-targeted-2.4.6-203.el5 libbonoboui-2.16.0-1.fc6 xorg-x11-xfs-1.0.2-4 xorg-x11-fonts-misc-7.1-2.1.el5 libgnomeprintui22-2.12.1-6 librsvg2-2.16.1-1.el5 openafs-1.4.10-1.1.1 pgi64-workstation-8.0-4 AdobeReader_enu-9.1.0-1 setup-2.5.58-4.el5 gnome-mime-data-2.4.2-3.1 termcap-5.5-1.20060701.1 glibc-common-2.5-34 yum-conf-53-1.SL man-pages-2.39-12.el5 mailcap-2.1.23-1.fc6 zlib-1.2.3-3 zlib-1.2.3-3 pkgconfig-0.21-2.el5 libpng-1.2.10-7.1.el5_3.2 libart_lgpl-2.3.17-4 info-4.8-14.el5 libsepol-1.15.2-1.el5 expat-1.95.8-8.2.1 freetype-2.2.1-21.el5_3 cyrus-sasl-lib-2.1.22-4 libattr-2.4.32-1.1 atk-1.12.2-1.fc6 popt-1.10.2.3-9.el5 desktop-file-utils-0.10-7 ncurses-5.5-24.20060715 audiofile-0.2.6-5 m4-1.4.5-3.el5.1 bzip2-1.0.3-4.el5_2 libfontenc-1.0.2-2.2.el5 perl-5.8.8-18.el5 aspell-0.60.3-7.1 shared-mime-info-0.19-5.el5 file-4.17-15 blas-3.0-37.el5 gdb-6.8-27.el5 ed-0.2-39.el5_2 time-1.7-27.2.2 grep-2.5.1-54.2.el5 libogg-1.1.3-3.el5 pax-3.4-1.2.2 iptables-ipv6-1.3.5-4.el5 perl-Compress-Zlib-1.42-1.fc6 groff-1.18.1.1-11.1 libdaemon-0.10-5.el5 checkpolicy-1.33.1-4.el5 libdrm-2.0.2-1.1 iptstate-1.4-1.1.2.2 psutils-1.17-26.1 ltrace-0.5-13.45svn.el5 cyrus-sasl-plain-2.1.22-4 telnet-0.17-39.el5 gperf-3.0.1-7.2.2 swig-1.3.29-2.el5 rdist-6.1.5-44 ncompress-4.2.4-47 strace-4.5.18-2.el5_3.3 flex-2.5.4a-41.fc6 zip-2.31-2.el5 libXau-1.0.1-3.1 libgcrypt-1.2.4-1.el5 db4-4.3.29-9.fc6 tcl-8.4.13-3.fc6 ORBit2-2.14.3-5.el5 libgfortran-4.1.2-44.el5 nss-3.12.2.0-4.el5 libcroco-0.6.1-2.1 libdaemon-0.10-5.el5 gnutls-1.4.1-3.el5_2.1 libogg-1.1.3-3.el5 slang-2.0.6-4.el5 elfutils-libs-0.137-3.el5 cyrus-sasl-plain-2.1.22-4 libgomp-4.3.2-7.el5 compat-glibc-2.3.4-2.26 tcp_wrappers-7.6-40.6.el5 libXt-1.0.2-3.1.fc6 libXpm-3.5.5-3 libXp-1.0.0-8.1.el5 libXfixes-4.0.1-2.1 atk-devel-1.12.2-1.fc6 libXxf86vm-1.0.1-3.1 gtk+-1.2.10-56.el5 libXxf86dga-1.0.1-3.1 tcl-devel-8.4.13-3.fc6 libidn-devel-0.6.5-1.1 nspr-devel-4.7.3-2.el5 libtermcap-devel-2.0.8-46.1 glibc-devel-2.5-34 libXxf86misc-1.0.1-3.1 perl-HTML-Tagset-3.10-2.1.1 libstdc++43-devel-4.3.2-7.el5 compat-gcc-34-g77-3.4.6-4 openmotif22-2.2.3-18 grub-0.97-13.2 nss-devel-3.12.2.0-4.el5 libmng-devel-1.0.9-5.1 xorg-x11-xtrans-devel-1.0.1-1.1.fc6 libtool-ltdl-devel-1.5.22-6.1 gamin-devel-0.1.7-8.el5 blas-devel-3.0-37.el5 db4-devel-4.3.29-9.fc6 pstack-1.2-7.2.2 atk-devel-1.12.2-1.fc6 automake15-1.5-16 ncurses-devel-5.5-24.20060715 glib-devel-1.2.10-20.el5 audiofile-devel-0.2.6-5 libtiff-devel-3.8.2-7.el5_2.2 libstdc++43-devel-4.3.2-7.el5 libjpeg-devel-6b-37 libXrender-0.9.1-3.1 libXp-1.0.0-8.1.el5 libXcursor-1.1.7-1.1 libXxf86vm-1.0.1-3.1 libXres-1.0.1-3.1 libXv-1.0.1-4.1 tix-8.4.0-11.fc6 gcc-c++-4.1.2-44.el5 giflib-devel-4.1.3-7.1.el5_3.1 findutils-4.2.27-5.el5 libXft-2.1.10-1.1 openssl-0.9.8e-7.el5 module-init-tools-3.3-0.pre3.1.42.el5 kpartx-0.4.7-23.el5_3.2 mesa-libGL-6.5.1-7.7.el5 hicolor-icon-theme-0.9-2.1 newt-0.52.2-12.el5 autoconf-2.59-12 device-mapper-multipath-0.4.7-23.el5_3.2 neon-0.25.5-10.el5 openmotif-2.3.1-2.el5 vim-minimal-7.0.109-4.el5_2.4z openjade-1.3.2-27 libxml2-python-2.6.26-2.1.2.7 m2crypto-0.16-6.el5.3 fipscheck-1.0.3-1.el5 logrotate-3.7.4-9 hwdata-0.213.11-1.el5 python-urlgrabber-3.1.0-5.el5 docbook-dtds-1.0-30.1 subversion-1.4.2-4.el5 gnupg-1.4.5-14 perl-DBD-MySQL-3.0007-2.el5 autofs-5.0.1-0.rc2.102 rhpl-0.194.1-1 libpcap-0.9.4-14.el5 parted-1.8.1-23.el5 audit-1.7.7-6.el5 vim-enhanced-7.0.109-4.el5_2.4z perl-IO-Socket-SSL-1.01-1.fc6 libbonobo-devel-2.16.0-1.fc6 bitmap-fonts-0.3-5.1.1 cairo-1.2.4-5.el5 gtk2-2.10.4-20.el5 gnome-keyring-0.6.0-1.fc6 pycairo-1.2.0-1.1 scrollkeeper-0.3.14-9.el5 at-3.1.8-82.fc6 libwnck-2.16.0-4.fc6 arts-1.5.4-1 libutempter-1.1.4-4.el5 cvs-1.11.22-5.el5 GConf2-devel-2.14.0-9.el5 rpm-libs-4.4.2.3-9.el5 util-linux-2.13-0.50.el5 openssl-0.9.8e-7.el5 GConf2-2.14.0-9.el5 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A blog page with compiler and specificities of sharing 32 and 64 bits architecture on the same node was created and accessible at 32 and 64 bits, tricks and tips.
You must save a copy of libmysqlclient.so.14 from an SL44 system and copy it under your SL5 distribution. This is due to the fact that SL5 libmysql is of version 15.0.0 but our older code hard linked to verison 14.0.0 . Hence, if you want support for your old libraries, you must preserve a copy of libmysql.
Similarly, you will need to make a copy of liblog4cxx.so.9 .
Both could be copied in $OPTSTAR/lib/ under the 32 bits deployment.