The full sample is ready. Please see the slides for the QA plots.

Update 11/28/2013
Regarding Daniel's questions:

1. Track quality cuts for matching
The track quailty cuts were not included in the R_BEMC vs. R_SMD cut. 
Actually it does not change the situation much.
These are the matching (R_BEMC) distributions without and with the acceptance cut:

The difference in numbers: 
zvtx<30: ~5% of electrons that pass the SMD matching cut are rejected by the BEMC matching cut 
zvtx>30: ~14% of electrons that pass the SMD matching cut are rejected by the BEMC matching cut 
any zvtx: ~8% of electrons that pass the SMD matching cut are rejected by the BEMC matching cut 

2. Fitting the peak
If one does the fit on the pT-weighted invariant mass peaks, than the fit converges with prob=1, and the peaks will be at the desired position.

Preliminary efficiencies

Upsilon 1S
Set\Eff    Acc+Trig+Trk     Mass         Match        EovrP        (nSigmaE)       (Comp2)       Total
 0-60%     0.162069     0.992627     0.642547     0.765839     0.7735     0.760471     0.0465661
 0-10%     0.134134     0.993441     0.662262     0.641828     0.7735     0.682025     0.0298807
10-30%     0.165859     0.993043     0.616851     0.765115     0.7735     0.77535     0.0466201
30-60%     0.204645     0.990842     0.668099     0.91587     0.7735     0.841164     0.0807276
  pT<2     0.144723     0.988528     0.639187     0.737514     0.7735     0.75429     0.0393479
2<pT<4     0.173634     0.997152     0.640171     0.805909     0.7735     0.763649     0.0527632
4<pT       0.204302     0.994478     0.658192     0.758287     0.7735     0.775835     0.0608532
y<.5       0.222073     0.992548     0.652421     0.752829     0.7735     0.777702     0.0651248
.5<y<1     0.10283     0.992794     0.621495     0.794957     0.7735     0.741253     0.0289191

Upsilon 2S
Set\Eff    Acc+Trig+Trk     Mass         Match        EovrP        (nSigmaE)       (Comp2)       Total
 0-60%     0.178091     0.992498     0.651761     0.798054     0.7735     0.771605     0.0548716
 0-10%     0.149262     0.992983     0.687064     0.668384     0.7735     0.712621     0.0375174
10-30%     0.182446     0.991072     0.632921     0.824294     0.7735     0.776046     0.0566266
30-60%     0.222684     0.994812     0.645003     0.923378     0.7735     0.848631     0.0866063
  pT<2     0.16907     0.994752     0.672733     0.818898     0.7735     0.77306     0.0554022
2<pT<4     0.183332     0.990535     0.624561     0.774981     0.7735     0.7714     0.0524462
4<pT       0.203416     0.989118     0.642437     0.773771     0.7735     0.765917     0.0592541
y<.5       0.237847     0.990469     0.666959     0.784681     0.7735     0.786881     0.075041
.5<y<1     0.118084     0.996604     0.621021     0.827106     0.7735     0.754257     0.0352665

Upsilon 3S
Set\Eff    Acc+Trig+Trk     Mass         Match        EovrP        (nSigmaE)       (Comp2)       Total
 0-60%     0.188975     0.986803     0.628902     0.816395     0.7735     0.768939     0.0569469
 0-10%     0.166221     0.988217     0.632685     0.719823     0.7735     0.711672     0.0411806
10-30%     0.192063     0.983495     0.63285     0.827127     0.7735     0.782308     0.059831
30-60%     0.224265     0.991919     0.615134     0.931925     0.7735     0.825935     0.0814692
  pT<2     0.174765     0.986289     0.636361     0.800522     0.7735     0.770124     0.0523067
2<pT<4     0.206584     0.987008     0.619679     0.840039     0.7735     0.766161     0.0629019
4<pT       0.204585     0.988184     0.625663     0.814163     0.7735     0.770921     0.0614093
y<.5       0.252782     0.98961     0.63069     0.814234     0.7735     0.790422     0.0785408
.5<y<1     0.126059     0.981253     0.625369     0.820705     0.7735     0.744565     0.036563 

(the numbers in the parenthesis should be determined from data)